# filelist

dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/external_tool_support/src/vcftools
filetypes: ffffff
filenames:
  VcfConsensusSupport.cpp/VcfConsensusSupport.h/VcfConsensusSupportTask.cpp/VcfConsensusSupportTask.h/VcfConsensusWorker.cpp/VcfConsensusWorker.h


filenames: GTTestsWorkflowParameterValidation.cpp/GTTestsWorkflowParameterValidation.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/parameters_validation


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Formats/_tmp/moc/release
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  moc_ABIFormat.cpp/moc_ASNFormat.cpp/moc_AbstractVariationFormat.cpp/moc_AceFormat.cpp/moc_AceImporter.cpp/moc_AprFormat.cpp/moc_AprImporter.cpp/moc_BAMUtils.cpp/moc_BedFormat.cpp/moc_BgzipTask.cpp/moc_CalculateSequencesNumberTask.cpp/moc_CloneAssemblyWithReferenceToDbiTask.cpp/moc_ClustalWAlnFormat.cpp/moc_ConvertAceToSqliteTask.cpp/moc_ConvertAssemblyToSamTask.cpp/moc_ConvertFileTask.cpp/moc_ConvertSnpeffVariationsToAnnotationsTask.cpp/moc_DNAQualityIOUtils.cpp/moc_Database.cpp/moc_DifferentialFormat.cpp/moc_DocumentFormatUtils.cpp/moc_EMBLGenbankAbstractDocument.cpp/moc_EMBLPlainTextFormat.cpp/moc_ExportTasks.cpp/moc_FastaFormat.cpp/moc_FastqFormat.cpp/moc_FpkmTrackingFormat.cpp/moc_GFFFormat.cpp/moc_GTFFormat.cpp/moc_GenbankLocationParser.cpp/moc_GenbankPlainTextFormat.cpp/moc_MSFFormat.cpp/moc_MegaFormat.cpp/moc_NEXUSFormat.cpp/moc_NewickFormat.cpp/moc_PDBFormat.cpp/moc_PDWFormat.cpp/moc_PairedFastqComparator.cpp/moc_PhylipFormat.cpp/moc_PlainTextFormat.cpp/moc_RawDNASequenceFormat.cpp/moc_SAMFormat.cpp/moc_SCFFormat.cpp/moc_SimpleSNPVariationFormat.cpp/moc_SnpeffInfoParser.cpp/moc_StockholmFormat.cpp/moc_StreamSequenceReader.cpp/moc_SwissProtPlainTextFormat.cpp/moc_TabulatedFormatReader.cpp/moc_VCF4VariationFormat.cpp/moc_VectorNtiSequenceFormat.cpp


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Core/src/models
filetypes: ffffffffffffffffffffff
filenames:
  BunchMimeData.cpp/BunchMimeData.h/DocumentImport.cpp/DocumentImport.h/DocumentModel.cpp/DocumentModel.h/DocumentUtils.cpp/DocumentUtils.h/Folder.cpp/Folder.h/GHints.cpp/GHints.h/GObject.cpp/GObject.h/GObjectReference.cpp/GObjectReference.h/MimeDataIterator.cpp/MimeDataIterator.h/ProjectModel.cpp/ProjectModel.h/StateLockableDataModel.cpp/StateLockableDataModel.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/query_designer/src
filetypes: ffffffffffffffffffffffffffffffd
filenames:
  QDDocument.cpp/QDDocument.h/QDDocumentFormat.cpp/QDDocumentFormat.h/QDGroupsEditor.cpp/QDGroupsEditor.h/QDRunDialog.cpp/QDRunDialog.h/QDSamples.cpp/QDSamples.h/QDSceneIOTasks.cpp/QDSceneIOTasks.h/QDTests.cpp/QDTests.h/QDWorker.cpp/QDWorker.h/QueryDesignerPlugin.cpp/QueryDesignerPlugin.h/QueryEditor.cpp/QueryEditor.h/QueryPalette.cpp/QueryPalette.h/QueryProcCfgDelegate.h/QueryProcCfgModel.h/QueryViewAdapter.cpp/QueryViewAdapter.h/QueryViewController.cpp/QueryViewController.h/QueryViewItems.cpp/QueryViewItems.h/library


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins_3rdparty/primer3/src/temperature
filetypes: ffffff
filenames:
  Primer3TmCalculator.cpp/Primer3TmCalculator.h/Primer3TmCalculatorFactory.cpp/Primer3TmCalculatorFactory.h/Primer3TmCalculatorSettingsWidget.cpp/Primer3TmCalculatorSettingsWidget.h


filenames: GTTestsMSAEditorConsensus.cpp/GTTestsMSAEditorConsensus.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/consensus


filetypes: ffddddddddd
dirname:
  /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor

filenames:
  GTTestsMsaEditor.cpp/GTTestsMsaEditor.h/align/colors/consensus/edit/exclude_list/multiline/overview/replace_character/tree


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Core/src/io
filetypes: fffffffffffffffffff
filenames:
  HttpFileAdapter.cpp/HttpFileAdapter.h/IOAdapter.cpp/IOAdapter.h/IOAdapterTextStream.cpp/IOAdapterTextStream.h/InputStream.h/LocalFileAdapter.cpp/LocalFileAdapter.h/OutputStream.h/RingBuffer.h/StringAdapter.cpp/StringAdapter.h/VFSAdapter.cpp/VFSAdapter.h/VirtualFileSystem.cpp/VirtualFileSystem.h/ZlibAdapter.cpp/ZlibAdapter.h


filenames: Assembly_browser/bowtie2/dna_assembly/extract_consensus/sam
filetypes: ddddd
dirname:
  /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/tests/common_scenarios/Assembling


filenames: GTTestsMSAEditorEdit.cpp/GTTestsMSAEditorEdit.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/edit


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/external_tool_support/src/cufflinks
filetypes: ffffffffffffffffffff
filenames:
  CuffdiffSupportTask.cpp/CuffdiffSupportTask.h/CuffdiffWorker.cpp/CuffdiffWorker.h/CufflinksSettings.cpp/CufflinksSettings.h/CufflinksSupport.cpp/CufflinksSupport.h/CufflinksSupportTask.cpp/CufflinksSupportTask.h/CufflinksWorker.cpp/CufflinksWorker.h/CuffmergeSupportTask.cpp/CuffmergeSupportTask.h/CuffmergeWorker.cpp/CuffmergeWorker.h/GffreadSupportTask.cpp/GffreadSupportTask.h/GffreadWorker.cpp/GffreadWorker.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2View/src/util_smith_waterman
filetypes: fffff
filenames:
  SmithWatermanDialog.cpp/SmithWatermanDialog.h/SmithWatermanDialogImpl.h/SubstMatrixDialog.cpp/SubstMatrixDialog.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/runnables/ugene/plugins/dotplot
filetypes: ffff
filenames:
  BuildDotPlotDialogFiller.cpp/BuildDotPlotDialogFiller.h/DotPlotDialogFiller.cpp/DotPlotDialogFiller.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Lang/src/support/external_script
filetypes: ffffff
filenames:
  ScriptContext.cpp/ScriptContext.h/ScriptableScheduler.cpp/ScriptableScheduler.h/WorkflowRunSerializedSchemeTask.cpp/WorkflowRunSerializedSchemeTask.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2View/src
filetypes: ffffffdddddddddddd
filenames:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2View/src/phyltree
filetypes: ffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/workflow_designer/src/tasks
filetypes: ffffff
filenames:
  ReadAssemblyTask.cpp/ReadAssemblyTask.h/RenameChromosomeInVariationTask.cpp/RenameChromosomeInVariationTask.h/SequenceQualityTrimTask.cpp/SequenceQualityTrimTask.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Algorithm/src/pairwise_alignment
filetypes: ffffff
filenames:
  NWAligner.cpp/NWAligner.h/PairwiseAligner.cpp/PairwiseAligner.h/PairwiseAlignmentTask.cpp/PairwiseAlignmentTask.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/ugeneui/_tmp/ui
filetypes: fffffffffffffffffff
filenames:
  ui_AboutDialog.h/ui_AppSettingsDialog.h/ui_CreateNewProjectWidget.h/ui_DirectoriesSettingsWidget.h/ui_DocumentFormatSelectorDialog.h/ui_DocumentProviderSelectorDialog.h/ui_ExportProjectDialog.h/ui_FormatSettingsWidget.h/ui_LogSettingsWidget.h/ui_MultipleSequenceFilesReadingMode.h/ui_NetworkSettingsWidget.h/ui_PluginViewerWidget.h/ui_ProjectViewWidget.h/ui_ResourceSettingsWidget.h/ui_SaveProjectDialog.h/ui_SequenceReadingModeSelectorDialog.h/ui_StatisticalReport.h/ui_TmpDirChangeDialog.h/ui_UserApplicationsSettingsWidget.h


filenames: GTTestsDocumentFromText.cpp/GTTestsDocumentFromText.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/tests/common_scenarios/document_from_text


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/external_tool_support/src/tophat
filetypes: ffffffff
filenames:
  TopHatSettings.cpp/TopHatSettings.h/TopHatSupport.cpp/TopHatSupport.h/TopHatSupportTask.cpp/TopHatSupportTask.h/TopHatWorker.cpp/TopHatWorker.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/ugeneui/src/workspace
filetypes: ffffffffffff
filenames:
  CloudStorageDockWidget.cpp/CloudStorageDockWidget.h/CloudStorageService.cpp/CloudStorageService.h/KeycloakAuthenticator.cpp/KeycloakAuthenticator.h/WebSocketClientService.cpp/WebSocketClientService.h/WorkspaceConnectionStatusIcon.cpp/WorkspaceConnectionStatusIcon.h/WorkspaceService.cpp/WorkspaceService.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins_3rdparty/hmm2/src/u_search
filetypes: ffffffffffff
filenames:
  HMMSearchDialogController.cpp/HMMSearchDialogController.h/HMMSearchQDActor.cpp/HMMSearchQDActor.h/HMMSearchTask.cpp/HMMSearchTask.h/HMMSearchWorker.cpp/HMMSearchWorker.h/uhmmsearch.cpp/uhmmsearch.h/uhmmsearch_opt.cpp/uhmmsearch_opt.h


filenames: CreateCmdlineBasedWorkerWizard.cpp/CreateCmdlineBasedWorkerWizard.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/workflow_designer/src/library/create_cmdline_based_worker


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/api
filetypes: ffffffffffffff
filenames:
  GTBaseCompleter.cpp/GTBaseCompleter.h/GTGraphicsItem.cpp/GTGraphicsItem.h/GTMSAEditorStatusWidget.cpp/GTMSAEditorStatusWidget.h/GTRegionSelector.cpp/GTRegionSelector.h/GTSequenceReadingModeDialog.cpp/GTSequenceReadingModeDialog.h/GTSequenceReadingModeDialogUtils.cpp/GTSequenceReadingModeDialogUtils.h/GTUtils.cpp/GTUtils.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/orf_marker/_tmp/moc/release
filetypes: ffffff
filenames:
  moc_ORFDialog.cpp/moc_ORFMarkerPlugin.cpp/moc_ORFMarkerTask.cpp/moc_ORFMarkerTests.cpp/moc_ORFQuery.cpp/moc_ORFWorker.cpp


filenames: colored
filetypes: d
dirname:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/api_tests/src/core/datatype/udr
filetypes: ffff
filenames:
  RawDataUdrSchemaUnitTests.cpp/RawDataUdrSchemaUnitTests.h/UdrSchemaUnitTests.cpp/UdrSchemaUnitTests.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/api_tests/src/core/util
filetypes: ffffffffffff
filenames:
  BAMUtilsUnitTests.cpp/BAMUtilsUnitTests.h/DatatypeSerializeUtilsUnitTest.cpp/DatatypeSerializeUtilsUnitTest.h/DynTableTests.cpp/DynTableTests.h/MsaDbiUtilsUnitTests.cpp/MsaDbiUtilsUnitTests.h/MsaImporterExporterUnitTests.cpp/MsaImporterExporterUnitTests.h/MsaUtilsUnitTests.cpp/MsaUtilsUnitTests.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/dna_export/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffffff
filenames:
  moc_CSVColumnConfigurationDialog.cpp/moc_ConvertMca2MsaTask.cpp/moc_DNAExportPlugin.cpp/moc_DNAExportPluginTests.cpp/moc_DNASequenceGenerator.cpp/moc_DNASequenceGeneratorDialog.cpp/moc_ExportAlignmentViewItems.cpp/moc_ExportBlastResultDialog.cpp/moc_ExportChromatogramDialog.cpp/moc_ExportMSA2MSADialog.cpp/moc_ExportMSA2SequencesDialog.cpp/moc_ExportMca2MsaDialog.cpp/moc_ExportMca2MsaTask.cpp/moc_ExportProjectViewItems.cpp/moc_ExportQualityScoresTask.cpp/moc_ExportQualityScoresWorker.cpp/moc_ExportSelectedSeqRegionsTask.cpp/moc_ExportSequenceTask.cpp/moc_ExportSequenceViewItems.cpp/moc_ExportSequences2MSADialog.cpp/moc_ExportSequencesDialog.cpp/moc_ExportUtils.cpp/moc_GenerateDNAWorker.cpp/moc_GetSequenceByIdDialog.cpp/moc_ImportAnnotationsFromCSVDialog.cpp/moc_ImportAnnotationsFromCSVTask.cpp/moc_ImportQualityScoresTask.cpp/moc_ImportQualityScoresWorker.cpp/moc_McaEditorContext.cpp/moc_SaveSelectedSequenceFromMSADialogController.cpp


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2View/src/ov_text
filetypes: ffff
filenames:
  SimpleTextObjectView.cpp/SimpleTextObjectView.h/SimpleTextObjectViewTasks.cpp/SimpleTextObjectViewTasks.h


filenames: GTTestsTrimmomaticElement.cpp/GTTestsTrimmomaticElement.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/pcr/src
filetypes: ffffffffffffffffffffffffffffffffffffffffffffdd
filenames:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Algorithm/src/util_msa_distance
filetypes: ffffffffffff
filenames:
  BuiltInDistanceAlgorithms.cpp/BuiltInDistanceAlgorithms.h/MsaDistanceAlgorithm.cpp/MsaDistanceAlgorithm.h/MsaDistanceAlgorithmHamming.cpp/MsaDistanceAlgorithmHamming.h/MsaDistanceAlgorithmHammingRevCompl.cpp/MsaDistanceAlgorithmHammingRevCompl.h/MsaDistanceAlgorithmRegistry.cpp/MsaDistanceAlgorithmRegistry.h/MsaDistanceAlgorithmSimilarity.cpp/MsaDistanceAlgorithmSimilarity.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Formats/src
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffddddd
filenames:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins
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filenames:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins_3rdparty/ptools/src
filetypes: ffffffd
filenames:
  PToolsAligner.cpp/PToolsAligner.h/PToolsPlugin.cpp/PToolsPlugin.h/PToolsTests.cpp/PToolsTests.h/ptools


filetypes: ffffffffff
dirname:
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filenames:
  BlastAlignToReferenceTask.cpp/BlastAlignToReferenceTask.h/ComposeResultSubtask.cpp/ComposeResultSubtask.h/MakeBlastDbAlignerSubtask.cpp/MakeBlastDbAlignerSubtask.h/PrepareReferenceSequenceTask.cpp/PrepareReferenceSequenceTask.h/RemoveGapsFromSequenceTask.cpp/RemoveGapsFromSequenceTask.h


dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/plugins/GUITestBase/src/runnables/ugene/plugins/enzymes
filetypes: ffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2Script/src
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filenames:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/corelibs/U2View/src/ov_phyltree/layout
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filenames:
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filenames: StructuralAlignmentDialogFiller.cpp/StructuralAlignmentDialogFiller.h
filetypes: ff
dirname:
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filenames: MeltingTemperatureSettingsDialogFiller.cpp/MeltingTemperatureSettingsDialogFiller.h
filetypes: ff
dirname:
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filenames:
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filenames: GTTestsDnaAssemblyConversions.cpp/GTTestsDnaAssemblyConversions.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-51.0-1.fc40.s390x/src/libs_3rdparty/QSpec/_tmp/moc/release
filetypes: fffff
filenames:
  moc_GTUtilsDialog.cpp/moc_GUITest.cpp/moc_GUITestsLauncher.cpp/moc_MainThreadRunnable.cpp/moc_MainThreadTimer.cpp


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filetypes:
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dirname: /usr/src/debug/vdr-epg-daemon-1.3.24-4.fc40.s390x
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dirname: /usr/src/debug/vdr-epg-daemon-1.3.24-4.fc40.s390x/lib
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dirname: /usr/src/debug/vdr-epg2vdr-1.2.16-7.fc40.s390x
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filetypes:
[cell repeats an earlier one in this file: 116 characters]


dirname: /usr/src/debug/vdr-extrecmenung-2.0.12-4.fc40.s390x
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dirname: /usr/src/debug/vdr-femon-2.4.0-28.fc40.s390x/symbols
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dirname: /usr/src/debug/vdr-graphlcd-1.0.6-16.fc40.s390x
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dirname: /usr/src/debug/vdr-live-3.3.10-1.fc40.s390x
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dirname: /usr/src/debug/vdr-osd2web-0.3.2-6.fc40.s390x
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dirname: /usr/src/debug/vdr-osdteletext-2.3.1-14.fc40.s390x
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dirname: /usr/src/debug/vdr-scraper2vdr-1.1.2-8.fc40.s390x
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dirname: /usr/src/debug/vdr-skinelchihd-1.2.4-0.5.20231222git53f8c87.fc40.s390x/symbols
filenames:
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filetypes:
[cell repeats an earlier one in this file: 141 characters]


dirname: /usr/src/debug/vdr-skinelchihd-1.2.4-0.5.20231222git53f8c87.fc40.s390x
filetypes: fffffffffffffffffffdffffdffff
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dirname: /usr/src/debug/vdr-skinenigmang-0.1.4-11.fc40.s390x/symbols/small
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dirname: /usr/src/debug/vdr-skinenigmang-0.1.4-11.fc40.s390x
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dirname: /usr/src/debug/vdr-skinnopacity-1.1.19-1.fc40.s390x
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dirname: /usr/src/debug/vdr-streamdev-0.6.3-11.fc40.s390x/server
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