NAME HPC::Runner - HPC Runner::Slurm, Runner::MCE and Runner::Threads base class VERSION Version 2.4.2 SYNOPSIS This is a base class for HPC::Runner::MCE and HPC::Runner:Threads. You should not need to call this module directly. EXPORT VARIABLES infile File of commands separated by newline. The command 'wait' indicates all previous commands should finish before starting the next one. _set_infile Internal variable outdir Directory to write out files and logs. _set_outdir Internal variable logdir Pattern to use to write out logs directory. Defaults to outdir/prunner_current_date_time/log1 .. log2 .. log3. procs Total number of running children allowed at any time. Defaults to 10. The command 'wait' can be used to have a variable number of children running. It is best to wrap this script in a slurm job to not overuse resources. This isn't used within this module, but passed off to mcerunner/parallelrunner. job_scheduler_id Job Scheduler ID running the script. Passed to slurm for mail information Internal VARIABLES You shouldn't be calling these directly. jobref Array of arrays details slurm/process/scheduler job id. Index -1 is the most recent job submissisions, and there will be an index -2 if there are any job dependencies wait Boolean value indicates any job dependencies process_table We also want to write all cmds and exit codes to a table Subroutines set_logdir Set the log directory set_logfile Set logfile init_log Initialize Log4perl log run_command_threads Start the thread, run the command, and finish the thread run_command_mce MCE knows which subcommand to use from Runner/MCE - object mce _log_commands Log the commands run them. Cat stdout/err with IO::Select so we hopefully don't break things. This example was just about 100% from the following perlmonks discussions. http://www.perlmonks.org/?node_id=151886 You can use the script at the top to test the runner. Just download it, make it executable, and put it in the infile as perl command.pl 1 perl command.pl 2 #so on and so forth AUTHOR Jillian Rowe, <jillian.e.rowe at gmail.com> BUGS Please report any bugs or feature requests to bug-runner-init at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Runner-Init. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes. SUPPORT You can find documentation for this module with the perldoc command. perldoc HPC::Runner You can also look for information at: * RT: CPAN's request tracker (report bugs here) http://rt.cpan.org/NoAuth/Bugs.html?Dist=Runner-Init * AnnoCPAN: Annotated CPAN documentation http://annocpan.org/dist/Runner-Init * CPAN Ratings http://cpanratings.perl.org/d/Runner-Init * Search CPAN http://search.cpan.org/dist/Runner-Init/ Acknowledgements This module was originally developed at and for Weill Cornell Medical College in Qatar within ITS Advanced Computing Team. With approval from WCMC-Q, this information was generalized and put on github, for which the authors would like to express their gratitude. LICENSE AND COPYRIGHT Copyright 2014 Weill Cornell Medical College. This program is free software; you can redistribute it and/or modify it under the terms of the the Artistic License (2.0). 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